PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011267.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 475aa    MW: 51403 Da    PI: 6.5206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011267.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.79e-13307352655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Do011267.1 307 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 352
                 689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-15304357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.69E-13305356No hitNo description
Gene3DG3DSA:4.10.280.105.5E-14306356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-10307352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-13307357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MYGSPASKDL NRPVQPPMAS SGLLRYRSAP SAVLGELCED FLPPGPRAAS PDAGADNVFS  60
RFLADQHIRD DKPSPPPAPA AVHFPSESDM ASQQQQQMMF HSQHQQQQQE MVDAKSGLYR  120
TVSSGMEPAA AAGTNNLTRQ SSSPAGFLDH LNMDNGYGAM LRAGMSMGFR DGSSTATADS  180
LAGGGGRLKG QLSFSSRQGS LMSQISEMDS EDVGGSSPEA AGGDRGYIPG YPMGSGWEDS  240
SSLMSENLSG MKRPRDSSEP GQNGLTHQFS LPKTSSEMAT IEKFLQFQDA VPCKIRAKRG  300
CATHPRSIAE RVRRTKISER IRKLQELVPN MDKQTNTSDM LDLAVDYIKD LQKQVKGGVL  360
GDLSLMCPEF VQLFLADFGA SGALTSALRF MTKAAFENTR DGFRKGAMSC FFELLYVLAY  420
AFVFPRLPIV KHYRAKAAAE GSLTVMADLA GLLLQESQTM YERIWALAET ENPGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9605911e-167EU960591.1 Zea mays clone 226472 DNA binding protein mRNA, complete cds.
GenBankKJ7277491e-167KJ727749.1 Zea mays clone pUT5690 bHLH transcription factor (bHLH90) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670485.10.0PREDICTED: transcription factor bHLH130-like isoform X1
TrEMBLA0A096SDD00.0A0A096SDD0_MAIZE; Uncharacterized protein
STRINGSi030166m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-57bHLH family protein